flywheel-gear-extensions

Form QC Coordinator

This gear coordinates the data quality checks for a given participant. It internally triggers the Form QC Checker gear to validate each visit.

• Visits are evaluated in the order of the visit date.
• If a visit fails validation, none of the subsequent visits will be evaluated until the failed visit is fixed.
• If a visit is modified, all the subsequents visits are re-evaluated for accuracy.

Environment

This gear uses the AWS SSM parameter store, and expects that AWS credentials are available in environment variables (AWS_SECRET_ACCESS_KEY, AWS_ACCESS_KEY_ID, AWS_DEFAULT_REGION) within the Flywheel runtime.

Running

This gear can only be run at subject level.

Inputs

• visits_file: YAML file with list of new/updated visits for the module/participant. Example
• qc_configs_file: JSON file with QC gear config information. Example

Configs

Gear configs are defined in manifest.json.

This site is open source. Improve this page.